Changelog

Source: NEWS.md

epocakir 0.9.92023-01-06

Bug Fixes

  • Use correctly typed missing values for upcoming dplyr 1.1.0 (#41)

epocakir 0.9.82022-05-04

Update README and formatting

Bug Fixes

  • Update readme and description
  • Addressed comments from goodpractice::gp()

epocakir 0.9.72021-06-09

CRAN re-submission

Bug Fixes

  • Added reference link in the description field of the DESCRIPTION file
  • Reduced the length of the title to less than 65 characters
  • aki_staging.Rd: Added @return value explaining the functions results
  • pipe.Rd: Removed code that re-exported %>% and used @importFrom instead

epocakir 0.9.6

Initial CRAN submission

Improvements

  • Added vignette Introduction to epocakir with basic usage examples
  • Updated README
  • Added sample clinical_obvs to demonstrate utility functions

Bug fixes

  • Exported conversion_factors, similar to ordered factors like aki_stages
  • Corrected mis-spelled words

epocakir 0.9.5

Added sample data and better examples

Improvements

  • Added sample data based on test data
  • Cleaned up code comments
  • Added examples to methods

Breaking Changes

Bug fixes

  • Fixed bug when n < m for combn() in combn_changes()
  • Changed methods from method.default() to method.data.frame() to prevent infinite recursion on incorrectly specified function arguments

epocakir 0.9.0

Improved high level API functions

Improvements

  • Wrote new combined eGFR() function that automatically selects the appropriate eGFR_method() formula to use
  • Wrote new combined aki() function that automatically calculates AKI based on all criteria and determines most severe stage
  • Added additional tests including warnings

Breaking Changes

  • Added No AKI and No Albuminuria to stages ordered factors to prevent users have to handle NAs mixed with ordered factors

Bug fixes

  • Fixed bug in eGFR_internal() where it was looking for !is.na(black) to select eGFR_adult_SCysC(), when black was not required

epocakir 0.8.0

Initial full-featured release of epocakir methods

Improvements

  • Wrote aki_SCr() function
  • Methods now include aki_bCr, aki_SCr, aki_UO, anemia, eGFR_adult_SCr, eGFR_adult_SCysC, eGFR_adult_SCr_SCysC, eGFR_child_SCr, eGFR_child_SCr_BUN, eGFR_child_SCysC, GFR_staging, Albuminuria_staging_AER, Albuminuria_staging_ACR and combn_changes

Bug fixes

  • Used tibble::tibble() instead of data.frame() to prevent issue with stringsasfactors difference between R 3.x and R 4.x
  • Fixed sorting error in `aki_UO()

epocakir 0.7.0

Re-wrote methods for consistency

Improvements

  • Removed duplicate GFR_staging() code
  • Stricter expect_identical() instead of expect_equal() assertions
  • Rewrote anemia() to make method selection consistent with other functions

Bug fixes

  • Consistent parameter naming

epocakir 0.6.0

Re-wrote all eGFR functions as S3 methods

Improvements

  • Wrote eGFR_adult_SCr, eGFR_adult_SCysC, eGFR_adult_SCr_SCysC, eGFR_child_SCr, eGFR_child_SCr_BUN, eGFR_child_SCysC methods

Breaking changes

  • Instead of individual functions, use methods for all low-level functions
  • Renamed functions to snake_case, e.g. eGFR.adult.SCr_SCysC to eGFR_adult_SCr_SCysC

epocakir 0.5.0

Improved handling of function arguments

Improvements

Breaking changes

  • Added version numbers to dependencies

epocakir 0.4.0

Added testing and additional utility functions to package

Improvements

  • Testing of edge-cases for as_metric(NULL), as_metric(1) and unknown measurements
  • Wrote as_metric()
  • Additional KDIGO guidelines (https://kdigo.org/guidelines/) added
  • Added Albuminuria levels as an ordered factor

Bug fix

  • Correctly use pmin instead of min in eGFR calculation

epocakir 0.1.5

dplyr compatible functions

Improvements

epocakir 0.1.0

Initial release

Improvements